Bioinformatics
Computational methods applied to biological, genomic, and metagenomic data.
Universidade Federal Rural da Amazônia (UFRA) — Campus Paragominas
LabCompAp
Applied Computing Laboratory
Applied computing research for the Amazon
About
Applied Computing Laboratory
The Applied Computing Laboratory (LabCompAp) is the physical space dedicated to the computing activities of the Applied Computing Research Center (NPCA) at the Federal Rural University of the Amazon (UFRA), Paragominas campus.
The laboratory supports research in computational intelligence, computational biology, bioinformatics, and agricultural informatics.
- Institution
- Universidade Federal Rural da Amazônia (UFRA)
- Campus
- Campus Paragominas
- Founded
- July 26, 2024
Research areas
Three areas concentrate the laboratory's research lines.
Computational Intelligence
Artificial intelligence and machine learning models for complex problems.
Computational Biology
Modeling and simulation of biological systems with computational tools.
Techniques and expertise
Techniques and methods used throughout our research.
- AI / Machine Learning
- Data Science
- Bioinformatics
Deep LearningData ScienceTime-Series ForecastingArtificial Neural NetworksComputer Vision and Deep LearningBioinformatics Analysis of NGS DataMachine LearningData AnalysisMetagenomic AnalysisGenomic AnalysisTranscriptome AnalysisComputer Vision Algorithm TrainingData WarehousingLLMs (Large Language Models)Bioinformatics and MultiomicsData MiningGenerative AIBig Data AnalysisTransfer LearningOmics Analysis
Equipment and infrastructure
Equipment and resources available in the laboratory. 23 catalogue entries.
| Equipment | Quantity | Main configuration |
|---|---|---|
| Noturno — high-performance server | 1 | HPE · ML350 2 × Intel Xeon Silver 4210R; 128 GB RAM; 4 × 4 TB HDD in RAID 5. |
Technical specifications
| ||
| Xavier — high-performance server | 1 | UPD SYS-620P-TR 2 × Intel Xeon Silver 4310; 256 GB ECC RAM; 2 × 14 TB HDD. |
Technical specifications
| ||
| Ciclope — Apple iMac | 1 | Apple · iMac M3 Apple M3; 24 GB unified memory; 2 TB SSD. |
Technical specifications
| ||
| Magneto — high-performance server | 1 | 2 × Intel Xeon Gold 5520+; 768 GB RAM; 2 × NVIDIA RTX 6000 Ada with 48 GB each. |
Technical specifications
| ||
| Fênix — multisensor drone | 1 | Spectral 2 Nuvem UAV RGB mapping, multispectral and thermal sensors. |
| SMS Net4 UPS | 2 | SMS · Net4 1800VA 1800 VA power rating. |
| SMS Power Sinus UPS | 2 | SMS · Power Sinus 3200VA 3200 VA power rating. |
| ASUS VivoBook Go 15 laptop | 3 | ASUS · E1504FA-NJ732 AMD Ryzen 5 7520U; 8 GB RAM; 512 GB SSD; 15.6-inch Full HD display. |
Technical specifications
| ||
| Samsung Galaxy Tab S10 FE tablet | 1 | Samsung · Galaxy Tab S10 FE 8 GB RAM; 128 GB storage; 10.9-inch display; S Pen. |
Technical specifications
| ||
| Laser multifunction printer | 2 | HP · Neverstop 1200W Laser printing and Wi-Fi connectivity. |
| Acer A515-54G-55HW laptop | 4 | Acer · A515-54G-55HW Intel Core i5; 8 GB RAM; 256 GB hard drive. |
| Acer A515-56-55LD laptop | 2 | Acer · A515-56-55LD Intel Core i5; 8 GB RAM; 256 GB SSD. |
| Lenovo IdeaPad laptop | 1 | Lenovo · IdeaPad Intel Core i3; 4 GB RAM; 256 GB SSD. |
| TP-Link Archer C80 router | 1 | TP-Link · Archer C80 Gigabit wireless router. |
| HPE Aruba switch | 1 | HPE Aruba Network switch. |
| Mini multimedia projector | 1 | Multimedia projection. |
| Toshiba external hard drive — 2 TB | 1 | Toshiba 2 TB external storage. |
| Toshiba external hard drive — 4 TB | 1 | Toshiba 4 TB external storage. |
| Workbench-style desk | 6 | Student workstation. |
| Workstation chair | 9 | Student workstation seating. |
| Double-door cabinet | 4 | Laboratory storage. |
| Wooden shelf | 3 | Laboratory storage and organisation. |
| Server desk and chair set | 1 | One desk and one chair. |
Noturno — high-performance server
- Quantity
- 1
HPE · ML3502 × Intel Xeon Silver 4210R; 128 GB RAM; 4 × 4 TB HDD in RAID 5.
Technical specifications
- HPE DDR4-2933 Dual Rank memory.
- Four 4 TB SATA hard drives, 7200 RPM, 3.5-inch, in RAID 5.
- NVIDIA Quadro P1000 graphics card.
- Two redundant 800 W power supplies.
- Integrated dual-port 10 Gb network.
- Internal SATA DVD-ROM drive.
- 27-inch Philips 4K monitor.
Xavier — high-performance server
- Quantity
- 1
UPD SYS-620P-TR2 × Intel Xeon Silver 4310; 256 GB ECC RAM; 2 × 14 TB HDD.
Technical specifications
- Two processors with 12 cores and 24 threads each, 2.1 GHz, 18 MB cache and 120 W TDP.
- DDR4-3200 ECC memory.
- Two 14 TB SATA drives.
- DCRE reference: 2024/10702-2.
Ciclope — Apple iMac
- Quantity
- 1
Apple · iMac M3Apple M3; 24 GB unified memory; 2 TB SSD.
Technical specifications
- 8-core CPU: 4 performance cores and 4 efficiency cores.
- 10-core GPU and 16-core Neural Engine.
- Gigabit Ethernet and two Thunderbolt / USB 4 ports.
Magneto — high-performance server
- Quantity
- 1
2 × Intel Xeon Gold 5520+; 768 GB RAM; 2 × NVIDIA RTX 6000 Ada with 48 GB each.
Technical specifications
- Two Intel Xeon Gold 5520+ processors, 28 cores, 2.2 GHz.
- 768 GB DDR5-6400 memory (12 × 64 GB).
- Storage: 14 TB HDD and 5.76 TB SSD.
- Two NVIDIA RTX 6000 Ada Generation GPUs, each with 48 GB GDDR6 ECC, a 384-bit interface and 960 GB/s bandwidth.
- Per GPU: 18,176 CUDA cores, 568 fourth-generation Tensor cores and 142 third-generation RT cores.
- Per GPU: 91.1 TFLOPS FP32, 210.6 TFLOPS Ray Tracing and 1,457 Tensor AI TOPS.
- Per GPU: 300 W TDP, four DisplayPort 1.4a connectors, dual-slot PCIe Gen 4 ×16.
Fênix — multisensor drone
- Quantity
- 1
Spectral 2 Nuvem UAVRGB mapping, multispectral and thermal sensors.
SMS Net4 UPS
- Quantity
- 2
SMS · Net4 1800VA1800 VA power rating.
SMS Power Sinus UPS
- Quantity
- 2
SMS · Power Sinus 3200VA3200 VA power rating.
ASUS VivoBook Go 15 laptop
- Quantity
- 3
ASUS · E1504FA-NJ732AMD Ryzen 5 7520U; 8 GB RAM; 512 GB SSD; 15.6-inch Full HD display.
Technical specifications
- Windows 11 Pro.
- Mixed Black colour.
Samsung Galaxy Tab S10 FE tablet
- Quantity
- 1
Samsung · Galaxy Tab S10 FE8 GB RAM; 128 GB storage; 10.9-inch display; S Pen.
Technical specifications
- Exynos 1580 processor, Wi-Fi and Android 15.
Laser multifunction printer
- Quantity
- 2
HP · Neverstop 1200WLaser printing and Wi-Fi connectivity.
Acer A515-54G-55HW laptop
- Quantity
- 4
Acer · A515-54G-55HWIntel Core i5; 8 GB RAM; 256 GB hard drive.
Acer A515-56-55LD laptop
- Quantity
- 2
Acer · A515-56-55LDIntel Core i5; 8 GB RAM; 256 GB SSD.
Lenovo IdeaPad laptop
- Quantity
- 1
Lenovo · IdeaPadIntel Core i3; 4 GB RAM; 256 GB SSD.
TP-Link Archer C80 router
- Quantity
- 1
TP-Link · Archer C80Gigabit wireless router.
HPE Aruba switch
- Quantity
- 1
HPE ArubaNetwork switch.
Mini multimedia projector
- Quantity
- 1
Multimedia projection.
Toshiba external hard drive — 2 TB
- Quantity
- 1
Toshiba2 TB external storage.
Toshiba external hard drive — 4 TB
- Quantity
- 1
Toshiba4 TB external storage.
Workbench-style desk
- Quantity
- 6
Student workstation.
Workstation chair
- Quantity
- 9
Student workstation seating.
Double-door cabinet
- Quantity
- 4
Laboratory storage.
Wooden shelf
- Quantity
- 3
Laboratory storage and organisation.
Server desk and chair set
- Quantity
- 1
One desk and one chair.
Photo gallery
Explore LabCompAp's spaces and infrastructure.
Location
Institutional location of the laboratory.
Address
Campus Paragominas
Universidade Federal Rural da Amazônia (UFRA)
PA-256, s/n
Paragominas — PAPostal code 68627-451